Stardate: Unknown The Equinox takes off after having taken kidnapped Seven of Nine and the Doctor, leaving Voyager left to fight the interspatial aliens. Voyager then purses the Equinox, and is aided by subterfuge by Seven. However, The Equinox' Captain removes the Doctor's ethical subroutines and the Doctor tortures Seven to recover codes she has refused to give up.
Meanwhile, on Voyager the EMH from the Equinox, who also has had his ethical subroutines removed, has replaced Voyager's EMH, and is attempting to hinder Voyager's attempt to overtake and capture the Equinox.
Can Voyager overcome the EMH's deceptions and some of the duplicitous crew of Equinox crew who were previously beamed aboard? It appears the answer lies with contact with the interspatial aliens.
While chasing a renegade Maquis ship in the Badlands, the USS Voyager and the Maquis ship they are chasing are pulled into a vortex, which sends them instantly to the Delta Quadrant. However, after the destruction of the device that transported them to the Delta Quadrant, the crew of Voyager and the crew of the Maquis ship must join together to fight their way back to their home in the Alpha quadrant, which is many years away. They will meet many foes and many obstacles along the way, but they will also bond as a crew, between those of the Maquis and those of Starfleet.