The X-Men and Brotherhood deal with the after math of the world finding out about mutants. Mystique, diguised as Professor X, manages to blow up the Insitute. Some of the X-Men and Brotherhood were captured, leaving the mutants that escaped to find them and the Professor.
Loosely following the main stories from the original comic, X-Men: Evolution accompanies the lives of six mutants (Cyclops, Jean Grey, Nightcrawler, Shadowcat, Rogue, and a new original character named Spyke) who attend Xavier's Institute for the Gifted, where they ought to learn how to control their powers and use them for good.
These teenagers must face a world that both fears and despises them.
X-Men: Evolution - Day of Recovery Synopsis and Schedule